Saint Johns University is accredited by Higher Learning Commission. It has 3 programmatic accredited programs.
The following table describes the detail information of institutional accreditation information.
Institutional Accreditation
| Agency Name | Accreditation Status | Periods |
| Higher Learning Commission | Accredited | 1/1/1950 - Current (Estimated Date) |
Programmatic Accreditation
| Program | Accreditation Status | Periods |
| Theology (THEOL) - Freestanding schools, as well as programs affiliated with larger institutions, offering graduate professional education for ministry and graduate study of theology | Accredited | 1/15/1969 - Current |
| Program | Accreditation Status | Periods |
| Nursing (CNURED) - Nursing education programs at the baccalaureate degree levels | Accredited | 9/28/2002 - Current |
| Program | Accreditation Status | Periods |
| Music (MUS) - Institutions and units within institutions offering degree-granting and/or non-degree-granting programs | Accredited | 9/1/1992 - 8/1/2014 |